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Fixing CloudLinux Update Conflicts: A Real-World Case from the Console

by sajibe
November 30, 2025
Linux, WHM, WHMCS

Every seasoned server admin eventually meets that moment: you’re running a harmless yum update -y, expecting the usual quiet churn of packages, when suddenly the terminal tosses a riddle at you. Recently, one of our CloudLinux 8 servers delivered exactly that kind of surprise — a pair of conflicting updates that brought the entire process to a halt.

The first issue came from ea-apache24-mod_lsapi. CloudLinux’s EA4 repository wanted to upgrade it, but the system didn’t have the matching liblsapi version available. The update stalled, insisting that nothing provided the version it needed.

Then, a second wrinkle:
Imunify360’s alt-python-internal package demanded a newer lvemanager than what was installed. A mismatch like this is the software world’s way of saying, “These two packages don’t play together yet.”

The Fix

The solution unfolded in two steps:

  1. Update LSAPI correctly:
    Enabling the CloudLinux repositories explicitly resolved the liblsapi dependency and brought LSAPI to the newest version.

    yum --enablerepo=cloudlinux* --enablerepo=cl-ea4 install liblsapi ea-apache24-mod_lsapi -y
  2. Upgrade lvemanager and its family:
    A clean metadata refresh followed by targeted updates brought lvemanager, lve-utils, and cagefs up to versions compatible with Imunify360.

    yum clean all
    dnf clean all
    yum --enablerepo=cloudlinux-* update lvemanager lve-utils cagefs -y

With those pieces in place, yum update -y returned to its natural, peaceful state:

Dependencies resolved.
Nothing to do.
Complete!

Why It Happens

CloudLinux, cPanel EA4, and Imunify360 all maintain their own repositories, and updates sometimes roll out at slightly different times. When one package jumps ahead, and a dependency lags behind, yum refuses to proceed. It’s a safety mechanism — annoying at 3 AM, but ultimately a friend.

The Takeaway

When you run into CloudLinux update blocks:

  • Clean your metadata

  • Enable the correct repos

  • Update dependency chains in the right order

A few precise commands can bring everything back into balance. And sometimes, the most stubborn errors break open neatly once the underlying packages are aligned again.

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